Hmmmmm kind of a tough question. I rode a 2003 Kawisaki Ninja 500 for a while and I loved the bike. Statistically speaking the Ninja has a better cooling system and a bit more HP (i think the Ninja beats the GS by something like 11 HP). Also reviews I have read rated the Ninja slightly better mechanically all around; by the slightest degree.
The GS looks SOOO much better than the Ninja though. I honestly think the Ninja is well overdue for a plastic and headlight update.
Bottom line: The differences between the bike really won't be exceptionally noticable. The GS looks better, and the Ninja is mechanically better.
P.S. I also found a Muzzy exhaust and a Lockhart Phillips full fairing kit for the Ninja.....in case you wanted to look into that stuff also.
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Anyone can fire a bullet. Only the good ones can steer one.
Bend your elbow, move your arse, and stick the knee out.
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